Bioconductor R package problem

Showing : R package problem • reset

votes

replies

1.8k

views

package installation compilation error r package problem shared libraries loading error

6.1 years ago Martin Maechler ▴ 330

votes

replies

2.5k

views

rbgl r package problem

updated 6.2 years ago by Martin Morgan 25k • written 6.2 years ago by ngs06 ▴ 20

vote

1.1k

views

package development r package problem build/check error mmappr2

6.3 years ago Kyle Johnsen ▴ 30

votes

replies

791

views

r package problem

updated 6.5 years ago by Mike Smith ★ 6.6k • written 6.5 years ago by hamedhm • 0

votes

replies

3.1k

views

r package problem

6.7 years ago rdpinho • 0

votes

replies

1.1k

views

r package problem

7.6 years ago Mohamad S. Hasan • 0

votes

replies

2.0k

views

package installation r package problem

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by sumudu_rangika ▴ 20

votes

replies

5.0k

views

software error r package problem

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by kkp7700 • 0

votes

replies

1.1k

views

R package problem

9.2 years ago zjzace • 0

9 results • Page 1 of 1

Recent ...

Replies

Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

Comment: Recount3 data correspond to TCGA data by Leonardo Collado Torres ★ 1.1k

Thanks @fep29! ^^

Votes

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Awards • All

Popular Question to Robert Castelo ★ 3.4k

Popular Question to Robert Ivanek ▴ 750